Sorry I was very non-descriptive of my problem.
I have a servo motor (Hitec HS-422) that I plug directly into my Axon 640 microcontroller (yes black wire to the outside). The motor deems to receiving direct voltage from the battery(no PWM) because it runs at a steady rate. It runs as if I had plugged the battery directly to the servo. I have been trying to figure this out for hours, turning on/off ports, changing code, and even putting in no code and still the same problem.