Hi Nic,
You should post this up on the Lynxmotion forum under Flowstone... That is where Devon who did Flowarm looks for messages. Sometime I should probably setup my AL5D arm, which was mounted on a rover and try out some of this stuff.
I did download Flowarm, and ran it without an ARM. It looked to me, that you could create a sequence, by moving the Arm to a location and hit the learn button, move it to another location, hit the Learn again... Then once you have all of the moves in you can hit the play button. At least that is what it looked like when I tried it without the arm...
Kurt